Deshpande, Nandan P.: search on Z-Library

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1

The draft genome of the pest tephritid fruit flyBactrocera tryoni: resources for the genomic analysis of hybridising species

Gilchrist, Anthony, Shearman, Deborah CA, Frommer, Marianne, Raphael, Kathryn A, Deshpande, Nandan P, Wilkins, Marc R, Sherwin, William B, Sved, John A

Journal:

Year:

2014

Language:

english

File:

PDF, 1.92 MB

english, 2014

2

RNA splicing alterations induce a cellular stress response associated with poor prognosis in Acute Myeloid Leukemia

Anande, Govardhan, Deshpande, Nandan P., Mareschal, Sylvain, Batcha, Aarif M.N., Hampton, Henry R., Herold, Tobias, Lehmann, SÃ¶ren, Wilkins, Marc R, Wong, Jason W. H., Unnikrishnan, Ashwin, Pimanda,

Journal:

Clinical Cancer Research

Year:

2020

File:

PDF, 7.09 MB

2020

3

Characterization of SNP and Structural Variations in the Mitochondrial Genomes of Tilletia indica and Its Closely Related Species Formed Basis for a Simple Diagnostic Assay

Tan, Mui-Keng, Raman, Harsh, Chambers, Grant, Sharma, Indu, Chen, Zhiliang, Deshpande, Nandan, Wilkins, Marc R., Gupta, Vijai

Journal:

Year:

2016

Language:

english

File:

PDF, 3.52 MB

english, 2016

4

130 - In Fecal Microbiota Transplantation (FMT) for Ulcerative Colitis, Fusobacterium is Associated with Lack of Remission, while Metabolic Shifts to Starch Degradation and Short Chain Fatty Acid Production are Associated with Remission – Results from the Randomized Controlled Focus Study

Paramsothy, Sudarshan, Kamm, Michael A., Nielsen, Shaun, Deshpande, Nandan, Faith, Jeremiah, Clemente, José C., Paramsothy, Ramesh, Walsh, Alissa, van den Bogaerde, Johan, Samuel, Douglas, Leong, Rupe

Journal:

Gastroenterology

Year:

2018

Language:

english

File:

PDF, 821 KB

english, 2018

5

Comparative analyses ofCampylobacter concisusstrains reveal the genome of the reference strain BAA-1457 is not representative of the species

Nadeem O Kaakoush, Nandan P Deshpande, Marc R Wilkins, Mark J Raftery, Karolina Janitz, Hazel Mitchell

Journal:

Year:

2011

Language:

english

File:

PDF, 1.71 MB

english, 2011

6

Intra-species variation within Lactobacillus rhamnosus correlates to beneficial or harmful outcomes: lessons from the oral cavity

Nadkarni, Mangala A., Deshpande, Nandan P., Wilkins, Marc R., Hunter, Neil

Journal:

Year:

2020

File:

PDF, 1.35 MB

2020

7

A proteomic analysis of salivary glands of female Anopheles gambiae mosquito

Dário E. Kalume, Mobolaji Okulate, Jun Zhong, Raghunath Reddy, Shubha Suresh, Nandan Deshpande, Nirbhay Kumar, Akhilesh Pandey

Journal:

Year:

2005

Language:

english

File:

PDF, 543 KB

english, 2005

8

Thermostable small-molecule inhibitor of angiogenesis and vascular permeability that suppresses a pERK-FosB/ÎFosBâVCAM-1 axis

Li, Yue, Alhendi, Ahmad M. N., Yeh, Mei-Chun, Elahy, Mina, Santiago, Fernando S., Deshpande, Nandan P., Wu, Ben, Chan, Enoch, Inam, Shafqat, Prado-Lourenco, Leonel, Marchand, Jessica, Joyce, Rohan D.,

Journal:

Science Advances

Year:

2020

File:

PDF, 3.47 MB

2020

9

GlycoSpectrumScan: Fishing Glycopeptides from MS Spectra of Protease Digests of Human Colostrum sIgA

Deshpande, Nandan, Jensen, Pia H., Packer, Nicolle H., Kolarich, Daniel

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 4.15 MB

english, 2010

10

Transcriptomic and Proteomic Analyses Reveal Key Innate Immune Signatures in the Host Response to the Gastrointestinal Pathogen Campylobacter concisus

Kaakoush, Nadeem O., Deshpande, Nandan P., Man, Si Ming, Burgos-Portugal, Jose A., Khattak, Faisal A., Raftery, Mark J., Wilkins, Marc R., Mitchell, Hazel M., Blanke, S. R.

Journal:

Infection and Immunity

Year:

2015

Language:

english

File:

PDF, 1.46 MB

english, 2015

11

Transcriptional response of Nautella italica R11 towards its macroalgal host uncovers new mechanisms of host-pathogen interaction

Hudson, Jennifer, Gardiner, Melissa, Deshpande, Nandan, Egan, Suhelen

Journal:

Molecular Ecology

Year:

2017

Language:

english

File:

PDF, 1.16 MB

english, 2017

12

Signatures within the esophageal microbiome are associated with host genetics, age, and disease

Deshpande, Nandan P., Riordan, Stephen M., Castaño-Rodríguez, Natalia, Wilkins, Marc R., Kaakoush, Nadeem O.

Journal:

Year:

2018

Language:

english

File:

PDF, 3.61 MB

english, 2018

13

Mining gene expression data for functional annotation of genomes

Nandan Deshpande, Akhilesh Pandey

Journal:

Trends in Biotechnology

Year:

2002

Language:

english

File:

PDF, 15 KB

english, 2002

14

A manually curated functional annotation of the human X chromosome

Harsha, H C, Suresh, Shubha, Amanchy, Ramars, Deshpande, Nandan, Shanker, K, Yatish, A J, Muthusamy, Babylakshmi, Vrushabendra, B M, Rashmi, B P, Chandrika, K N

Journal:

Nature Genetics

Year:

2005

Language:

english

File:

PDF, 123 KB

english, 2005

15

Comparative genomics ofCampylobacter concisusisolates reveals genetic diversity and provides insights into disease association

Deshpande, Nandan P, Kaakoush, Nadeem O, Wilkins, Marc R, Mitchell, Hazel M

Journal:

Year:

2013

Language:

english

File:

PDF, 868 KB

english, 2013

16

Tools to Covisualize and Coanalyze Proteomic Data with Genomes and Transcriptomes: Validation of Genes and Alternative mRNA Splicing

Pang, Chi Nam Ignatius, Tay, Aidan P., Aya, Carlos, Twine, Natalie A., Harkness, Linda, Hart-Smith, Gene, Chia, Samantha Z., Chen, Zhiliang, Deshpande, Nandan P., Kaakoush, Nadeem O., Mitchell, Hazel

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 4.79 MB

english, 2014

17

Integrative Genomics Identifies the Molecular Basis of Resistance to Azacitidine Therapy in Myelodysplastic Syndromes

Unnikrishnan, Ashwin, Papaemmanuil, Elli, Beck, Dominik, Deshpande, Nandan P., Verma, Arjun, Kumari, Ashu, Woll, Petter S., Richards, Laura A., Knezevic, Kathy, Chandrakanthan, Vashe, Thoms, Julie A.I

Journal:

Year:

2017

Language:

english

File:

PDF, 2.72 MB

english, 2017

18

Campylobacter concisus pathotypes induce distinct global responses in intestinal epithelial cells

Deshpande, Nandan P., Wilkins, Marc R., Castaño-Rodríguez, Natalia, Bainbridge, Emily, Sodhi, Nidhi, Riordan, Stephen M., Mitchell, Hazel M., Kaakoush, Nadeem O.

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.95 MB

english, 2016

19

Little evidence of adaptation potential to ocean acidification in sea urchins living in “Future Ocean” conditions at a CO 2 vent

Uthicke, Sven, Deshpande, Nandan P., Liddy, Michelle, Patel, Frances, Lamare, Miles, Wilkins, Marc R.

Journal:

Ecology and Evolution

Year:

2019

File:

PDF, 758 KB

2019

20

Little evidence of adaptation potential to ocean acidification in sea urchins living in “Future Ocean” conditions at a CO 2 vent

Uthicke, Sven, Deshpande, Nandan P., Liddy, Michelle, Patel, Frances, Lamare, Miles, Wilkins, Marc R.

Journal:

Ecology and Evolution

Year:

2019

Language:

english

File:

PDF, 758 KB

english, 2019

21

Fast Short Read De-novo Assembly Using Overlap-Layout-Consensus Approach

Bayat, Arash, Deshpande, Nandan P., Wilkins, Marc R., Parameswaran, Sri

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.13 MB

english, 2018

22

ONCOMINE: A Cancer Microarray Database and Integrated Data-Mining Platform

Rhodes, Daniel R., Yu, Jianjun, Shanker, K., Deshpande, Nandan, Varambally, Radhika, Ghosh, Debashis, Barrette, Terrence, Pander, Akhilesh, Chinnaiyan, Arul M.

Journal:

Year:

2004

Language:

english

File:

PDF, 275 KB

english, 2004

23

Novel genetic markers define a subgroup of pathogenic Escherichia coli strains belonging to the B2 phylogenetic group

Deshpande, Nandan P., Wilkins, Marc R., Mitchell, Hazel M., Kaakoush, Nadeem O.

Journal:

FEMS Microbiology Letters

Year:

2015

Language:

english

File:

PDF, 597 KB

english, 2015

24

Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E

Waters, Shafagh A, McAteer, Sean P, Kudla, Grzegorz, Pang, Ignatius, Deshpande, Nandan P, Amos, Timothy G, Leong, Kai Wen, Wilkins, Marc R, Strugnell, Richard, Gally, David L, Tollervey, David, Tree,

Journal:

The EMBO Journal

Year:

2017

Language:

english

File:

PDF, 1.69 MB

english, 2017

25

History of European ideas special topic issues in print

Rhodes, Daniel R., Yu, Jianjun, Shanker, K., Deshpande, Nandan, Varambally, Radhika, Ghosh, Debashis, Barrette, Terrence, Pander, Akhilesh, Chinnaiyan, Arul M.

Journal:

History of European Ideas

Year:

1988

Language:

english

File:

PDF, 51 KB

english, 1988

26

BioBuilder as a database development and functional annotation platform for proteins

J Daniel Navarro, Naveen Talreja, Suraj Peri, BM Vrushabendra, BP Rashmi, N Padma, Vineeth Surendranath, Chandra Kiran Jonnalagadda, PS Kousthub, Nandan Deshpande, K Shanker, Akhilesh Pandey

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 608 KB

english, 2004

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